Home
  • Setup
  • Episodes
    • Introduction
    • Logging onto Cloud
    • Introducing the Shell
    • Navigating Files and Directories
    • Working with Files and Directories
    • Redirection
    • Writing Scripts
    • Project Organization
    • Assessing Read Quality
    • Trimming and Filtering
    • Variant Calling Workflow
    • Automating a Variant Calling Workflow
    • R for microbial genomics
    • Introduction Day3
    • Sequence assembly
    • Sequence Quality
    • Inspecting sequence graphs
    • Annotation
    • Pangenome analysis
    • Phylogenetic trees from the core genome
    • Bacterial GWAS
    • Wrapup Day 3 and 4
    • All in one page (Beta)
  • Extras
    • Reference
    • About
    • Discussion
    • Figures
    • Instructor Notes
  • License
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