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A list of plasmid prediction tools
7 minute read
Published:
In his recent publication Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data Julian Paganini reviewed software tools to predict bacterial plasmids from sequencing data.
How to separate the nesting dolls
less than 1 minute read
Published:
Mobile genetic elements can be nested, like russian dolls. This is also the case for the vanA gene cluster in Enterococcus faecium, which is located on a Tn1546 transposon, which, in turn, is often located on plasmids.
An ML classifier for A. baumanii plasmids
less than 1 minute read
Published:
Update August 2021: The A.baumannii model is now integrated in mlplasmids
Plasmid genomics: gplas
less than 1 minute read
Published:
Update 2020-04-11: Now published in Bioinformatics